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Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 12.5% PEG 1K, 25% ethylene glycol, 100 mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.82 67.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 205.3 α = 90 b = 118.5 β = 99.6 c = 338.9 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2008-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.0 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 100 85 0.128 4.5 132456 112570 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.28 68.4 0.9 1.95 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 50 132456 106885 5676 85.01 0.23461 0.23186 0.2314 0.28623 0.2841 RANDOM 75.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.14 -0.21 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.391 r_dihedral_angle_3_deg 20.373 r_dihedral_angle_4_deg 17.553 r_dihedral_angle_1_deg 7.641 r_scangle_it 6.731 r_scbond_it 4.507 r_mcangle_it 3.353 r_mcbond_it 2.465 r_angle_refined_deg 1.312 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.391 r_dihedral_angle_3_deg 20.373 r_dihedral_angle_4_deg 17.553 r_dihedral_angle_1_deg 7.641 r_scangle_it 6.731 r_scbond_it 4.507 r_mcangle_it 3.353 r_mcbond_it 2.465 r_angle_refined_deg 1.312 r_angle_other_deg 0.901 r_mcbond_other 0.367 r_nbd_refined 0.21 r_symmetry_vdw_other 0.202 r_nbd_other 0.196 r_nbtor_refined 0.185 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.135 r_nbtor_other 0.091 r_chiral_restr 0.075 r_xyhbond_nbd_other 0.03 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34573 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 402
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing