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Crystal structure of a putative phosphosugar isomerase (stm_0572) from salmonella typhimurium lt2 at 2.12 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 277 0.2000M NaThioCyanate, 20.0000% PEG-3350, No Buffer pH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.21 44.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.88 α = 90 b = 63.88 β = 90 c = 295.93 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-11-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.90496,0.97858,0.97824 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 29.323 91.2 0.054 12.91 5.62 38085 -3 34.434
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.2 78.2 0.411 1.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.12 29.323 38084 1899 98.88 0.167 0.165 0.1673 0.212 0.2146 RANDOM 36.186
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.425 r_dihedral_angle_4_deg 17.767 r_dihedral_angle_3_deg 14.931 r_dihedral_angle_1_deg 6.286 r_scangle_it 5.647 r_scbond_it 4.16 r_mcangle_it 2.326 r_angle_refined_deg 1.413 r_mcbond_it 1.368 r_angle_other_deg 0.949
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.425 r_dihedral_angle_4_deg 17.767 r_dihedral_angle_3_deg 14.931 r_dihedral_angle_1_deg 6.286 r_scangle_it 5.647 r_scbond_it 4.16 r_mcangle_it 2.326 r_angle_refined_deg 1.413 r_mcbond_it 1.368 r_angle_other_deg 0.949 r_mcbond_other 0.373 r_nbd_refined 0.23 r_nbd_other 0.194 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.163 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5188 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing