☰ Navigation Tabs
Crystal structure of a putative n-acetyltransferase (ta0374) from thermoplasma acidophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1 M HEPES, 10% (w/v) PEG 8000, 10% (w/v) ETHYLENE GLYCOL , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.229 α = 101.19 b = 60.915 β = 90.1 c = 72.116 γ = 89.97
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MIRROR 2008-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97872 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 97.1 0.051 2 30257 30257 -3 67.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 91.2 0.38 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 30 28727 28727 1530 97.15 0.23215 0.22972 0.2445 0.27555 0.276 RANDOM 40.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.01 0.11 0.02 -4.89 -1.98 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.486 r_dihedral_angle_3_deg 14.604 r_dihedral_angle_4_deg 12.192 r_scangle_it 4.915 r_dihedral_angle_1_deg 4.043 r_scbond_it 3.026 r_angle_refined_deg 1.999 r_mcangle_it 1.793 r_angle_other_deg 1.166 r_mcbond_it 0.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.486 r_dihedral_angle_3_deg 14.604 r_dihedral_angle_4_deg 12.192 r_scangle_it 4.915 r_dihedral_angle_1_deg 4.043 r_scbond_it 3.026 r_angle_refined_deg 1.999 r_mcangle_it 1.793 r_angle_other_deg 1.166 r_mcbond_it 0.954 r_mcbond_other 0.236 r_chiral_restr 0.12 r_bond_refined_d 0.022 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5331 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 8
Software Software Software Name Purpose Blu-Ice data collection Coot model building ARP/wARP model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling