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Crystal structure of the Shutoff and Exonuclease Protein from Kaposis Sarcoma Associated Herpesvirus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.2M Lithium sulfate, 0.1M Bis-TRIS, 25%PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.247 α = 95.48 b = 48.905 β = 106.86 c = 67.294 γ = 104.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-06-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2007-06-28 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.97954 BESSY 14.2 2 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93300 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.85 46.63 0.073 12.1 3.4 41764 28.119
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 46.63 39306 2096 96.37 0.18582 0.18356 0.22807 0.2716 RANDOM 23.126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.44 0.29 0.3 0.27 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.498 r_dihedral_angle_4_deg 19.42 r_dihedral_angle_3_deg 13.496 r_dihedral_angle_1_deg 5.72 r_scangle_it 3.308 r_scbond_it 2.27 r_mcangle_it 1.482 r_angle_refined_deg 1.35 r_mcbond_it 0.876 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.498 r_dihedral_angle_4_deg 19.42 r_dihedral_angle_3_deg 13.496 r_dihedral_angle_1_deg 5.72 r_scangle_it 3.308 r_scbond_it 2.27 r_mcangle_it 1.482 r_angle_refined_deg 1.35 r_mcbond_it 0.876 r_nbtor_refined 0.304 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.191 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3591 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 16
Software Software Software Name Purpose SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling