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Structure of the C-terminus of Adseverin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 20% PEG 4000, 200mM sodium isothiocyanate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.749113 29.678656
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.644 α = 88.79 b = 90.384 β = 88.26 c = 98.839 γ = 76.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 315 2007-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 90.3 0.04 16.784 1.9 41218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 85 0.142 1.8 3909
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P8X 3 29.92 41211 2084 90.23 0.247 0.244 0.2325 0.295 0.274 RANDOM 38.605
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 0.08 -0.05 -0.04 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.442 r_dihedral_angle_3_deg 18.974 r_dihedral_angle_4_deg 18.151 r_dihedral_angle_1_deg 5.354 r_angle_refined_deg 1.002 r_scangle_it 0.495 r_nbtor_refined 0.31 r_scbond_it 0.306 r_symmetry_vdw_refined 0.301 r_mcangle_it 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.442 r_dihedral_angle_3_deg 18.974 r_dihedral_angle_4_deg 18.151 r_dihedral_angle_1_deg 5.354 r_angle_refined_deg 1.002 r_scangle_it 0.495 r_nbtor_refined 0.31 r_scbond_it 0.306 r_symmetry_vdw_refined 0.301 r_mcangle_it 0.298 r_symmetry_hbond_refined 0.245 r_nbd_refined 0.203 r_mcbond_it 0.168 r_xyhbond_nbd_refined 0.128 r_metal_ion_refined 0.106 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19089 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 23
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction