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Crystal structure of Delta413-417:GS I805W LOX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FG1 PDB ENTRY 3FG1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 298 6-8% PEG 8000, 5% Glycerol, 0.2M CaCl2, 0.1M Imidazole acetate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.88 57.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.704 α = 90 b = 170.214 β = 96.13 c = 104.202 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CAMD BEAMLINE GCPCC CAMD GCPCC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.1 0.073 18.576 3.8 263905 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.13 76.3 0.34 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 3FG1 1.9 34.54 263905 14029 98.43 0.164 0.162 0.1622 0.206 0.2061 RANDOM 27.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 1.61 -0.59 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.788 r_dihedral_angle_4_deg 20.232 r_dihedral_angle_3_deg 13.545 r_dihedral_angle_1_deg 6.589 r_scangle_it 4.826 r_scbond_it 3.257 r_mcangle_it 1.969 r_angle_refined_deg 1.886 r_mcbond_it 1.197 r_chiral_restr 0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.788 r_dihedral_angle_4_deg 20.232 r_dihedral_angle_3_deg 13.545 r_dihedral_angle_1_deg 6.589 r_scangle_it 4.826 r_scbond_it 3.257 r_mcangle_it 1.969 r_angle_refined_deg 1.886 r_mcbond_it 1.197 r_chiral_restr 0.155 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21804 Nucleic Acid Atoms Solvent Atoms 2485 Heterogen Atoms 236
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing