☰ Navigation Tabs
Putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 294 1.26 M ammonium sulfate, 0.1 M acetate buffer, 0.2 M sodium chloride, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.37 63.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.536 α = 90 b = 60.536 β = 90 c = 96.065 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.1 94.1 0.067 40.087 9 11909 11909 48.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 57.4 0.709 2.08 7.8 355
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 39.1 11852 11852 572 93.79 0.207 0.207 0.206 0.223 0.231 0.2551 RANDOM 34.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 1.84 -3.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.195 r_dihedral_angle_4_deg 20.504 r_dihedral_angle_3_deg 19.725 r_dihedral_angle_1_deg 6.143 r_scangle_it 4.181 r_scbond_it 2.541 r_angle_refined_deg 1.758 r_mcangle_it 1.728 r_angle_other_deg 0.962 r_mcbond_it 0.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.195 r_dihedral_angle_4_deg 20.504 r_dihedral_angle_3_deg 19.725 r_dihedral_angle_1_deg 6.143 r_scangle_it 4.181 r_scbond_it 2.541 r_angle_refined_deg 1.758 r_mcangle_it 1.728 r_angle_other_deg 0.962 r_mcbond_it 0.916 r_mcbond_other 0.198 r_chiral_restr 0.103 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 890 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing