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Crystal structure of human Gelsolin domains G1-G3 bound to Actin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 297 9% PEG 4000, 100 mM Sodium Acetate, 100 mM Calcium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 3.31 62.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.179 α = 90 b = 146.923 β = 90 c = 148.301 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.00 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.998 50 99.5 0.097 13.565 4.1 44802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.998 3.11 97.7 0.393 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 30 42953 2264 99.74 0.20448 0.20088 0.1957 0.27309 0.2637 RANDOM 21.643
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.04 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.876 r_dihedral_angle_3_deg 19.881 r_dihedral_angle_4_deg 19.288 r_dihedral_angle_1_deg 5.841 r_scangle_it 1.778 r_angle_refined_deg 1.263 r_scbond_it 0.993 r_mcangle_it 0.797 r_mcbond_it 0.417 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.876 r_dihedral_angle_3_deg 19.881 r_dihedral_angle_4_deg 19.288 r_dihedral_angle_1_deg 5.841 r_scangle_it 1.778 r_angle_refined_deg 1.263 r_scbond_it 0.993 r_mcangle_it 0.797 r_mcbond_it 0.417 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.151 r_metal_ion_refined 0.149 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11084 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction