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Structure of Achromobactin Synthetase Protein D, (AcsD)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1M Tris-HCl, pH8.5, 1.0M sodium tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.328 α = 90 b = 95.729 β = 90 c = 160.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2006-09-12 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 torodial focusing mirror 2006-07-25 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.976 ESRF BM14 2 SYNCHROTRON ESRF BEAMLINE ID14-4 0.979 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.25 50 94.4 0.098 11.5 3 56200 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.25 2.38 91.5 0.402 3.2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 28.72 55464 2970 98.25 0.18907 0.18634 0.1901 0.24055 0.2437 RANDOM 18.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.046 r_dihedral_angle_4_deg 16.045 r_dihedral_angle_3_deg 13.661 r_dihedral_angle_1_deg 5.876 r_scangle_it 1.856 r_scbond_it 1.217 r_angle_refined_deg 1.093 r_angle_other_deg 0.843 r_mcangle_it 0.728 r_mcbond_it 0.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.046 r_dihedral_angle_4_deg 16.045 r_dihedral_angle_3_deg 13.661 r_dihedral_angle_1_deg 5.876 r_scangle_it 1.856 r_scbond_it 1.217 r_angle_refined_deg 1.093 r_angle_other_deg 0.843 r_mcangle_it 0.728 r_mcbond_it 0.673 r_symmetry_vdw_other 0.285 r_symmetry_vdw_refined 0.267 r_nbd_other 0.196 r_nbd_refined 0.195 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.14 r_mcbond_other 0.089 r_nbtor_other 0.084 r_chiral_restr 0.058 r_xyhbond_nbd_other 0.02 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9205 Nucleic Acid Atoms Solvent Atoms 501 Heterogen Atoms
Software Software Software Name Purpose XDS data scaling SHELXS phasing REFMAC refinement XDS data reduction SCALA data scaling