X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BOF 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6293100 mM Sodium Acetate pH 5.9-6.3, 1.8-2.1 M Ammonium Sulphate, VAPOR DIFFUSION, temperature 293K, pH 6.0
Crystal Properties
Matthews coefficientSolvent content
3.1961.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.761α = 90
b = 121.761β = 90
c = 68.714γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDADSC QUANTUM 315mirrors2006-11-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-CAPS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5759.81000.067.3161573358.45
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.572.71000.2757.47.517350

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1BOF2.5759.81534781099.990.1810.226RANDOM41.565
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.31-0.310.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.186
r_dihedral_angle_4_deg20.126
r_dihedral_angle_3_deg16.08
r_dihedral_angle_1_deg5.391
r_scangle_it4.1
r_scbond_it2.614
r_mcangle_it1.95
r_angle_refined_deg1.372
r_mcbond_it1.116
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.186
r_dihedral_angle_4_deg20.126
r_dihedral_angle_3_deg16.08
r_dihedral_angle_1_deg5.391
r_scangle_it4.1
r_scbond_it2.614
r_mcangle_it1.95
r_angle_refined_deg1.372
r_mcbond_it1.116
r_nbtor_refined0.307
r_symmetry_vdw_refined0.26
r_symmetry_hbond_refined0.214
r_nbd_refined0.203
r_xyhbond_nbd_refined0.169
r_chiral_restr0.088
r_bond_refined_d0.012
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2607
Nucleic Acid Atoms
Solvent Atoms46
Heterogen Atoms33

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling