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Crystal structure of uncharacterized protein eah89906
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 294 6% PEG 8000, MES, PH 6.0, 200MM SODIU ACYTATE,10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.75 55.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.208 α = 81.75 b = 108.048 β = 80.36 c = 171.132 γ = 74.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 50 98 0.206 3.2 3.1 227280 -0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.61 2.7 97.1 0.76 1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 2R8C 2.63 20 212060 6581 96.43 0.23902 0.23769 0.2416 0.28148 0.2837 RANDOM 58.115
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 -0.93 1.96 -0.46 0.09 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.777 r_dihedral_angle_3_deg 22.156 r_dihedral_angle_4_deg 18.905 r_scangle_it 12.458 r_scbond_it 8.363 r_dihedral_angle_1_deg 8.23 r_mcangle_it 7.036 r_mcbond_it 4.703 r_angle_refined_deg 1.08 r_symmetry_hbond_refined 0.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.777 r_dihedral_angle_3_deg 22.156 r_dihedral_angle_4_deg 18.905 r_scangle_it 12.458 r_scbond_it 8.363 r_dihedral_angle_1_deg 8.23 r_mcangle_it 7.036 r_mcbond_it 4.703 r_angle_refined_deg 1.08 r_symmetry_hbond_refined 0.494 r_symmetry_vdw_refined 0.353 r_nbtor_refined 0.318 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.088 r_metal_ion_refined 0.045 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 48085 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 32
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling