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Crystal structure of putative glucosidase lplD from bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 23% PEG 3350, 0.17M Ammonium Sulphate, 0.1M Magnesium Acetate, pH 7.0, Vapor diffusion, Sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.987 α = 69.8 b = 84.843 β = 68.1 c = 86.051 γ = 64.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-11-05 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 94 0.07 0.068 10.697 2.9 90052 90052
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 63.8 0.174 0.175 5.1 1.5 6125
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 50 90052 4505 93.54 0.19 0.187 0.1816 0.243 0.2359 RANDOM 33.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 1.17 1.02 -0.73 0.64 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.095 r_dihedral_angle_4_deg 21.407 r_dihedral_angle_3_deg 15.951 r_dihedral_angle_1_deg 5.529 r_scangle_it 3.804 r_mcangle_it 2.819 r_scbond_it 2.649 r_mcbond_it 1.825 r_angle_refined_deg 1.249 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.095 r_dihedral_angle_4_deg 21.407 r_dihedral_angle_3_deg 15.951 r_dihedral_angle_1_deg 5.529 r_scangle_it 3.804 r_mcangle_it 2.819 r_scbond_it 2.649 r_mcbond_it 1.825 r_angle_refined_deg 1.249 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13534 Nucleic Acid Atoms Solvent Atoms 535 Heterogen Atoms 39
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction PHENIX phasing