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Mouse UHRF1 SRA domain bound with hemi-methylated CpG DNA, crystal structure in space group C222(1) at 1.4 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 277 20% PEG 3350, 0.4M NaCl, pH 7.0, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.63 53.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.678 α = 90 b = 103.691 β = 90 c = 149.838 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 32.79 97 0.095 10.9 5.1 121098 -3 12.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.41 1.45 0.771 1 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 32.79 114952 6067 96.07 0.15093 0.14906 0.1481 0.18632 0.1853 RANDOM 19.522
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.08 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.399 r_dihedral_angle_4_deg 18.863 r_dihedral_angle_3_deg 12.581 r_sphericity_free 10.095 r_sphericity_bonded 6.561 r_dihedral_angle_1_deg 5.563 r_scangle_it 5.494 r_scbond_it 4.075 r_mcangle_it 3.161 r_rigid_bond_restr 2.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.399 r_dihedral_angle_4_deg 18.863 r_dihedral_angle_3_deg 12.581 r_sphericity_free 10.095 r_sphericity_bonded 6.561 r_dihedral_angle_1_deg 5.563 r_scangle_it 5.494 r_scbond_it 4.075 r_mcangle_it 3.161 r_rigid_bond_restr 2.613 r_mcbond_it 2.189 r_angle_refined_deg 2.12 r_chiral_restr 0.205 r_bond_refined_d 0.022 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3349 Nucleic Acid Atoms 1016 Solvent Atoms 680 Heterogen Atoms 114
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling