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Crystal Structure of Trypanosoma Brucei phosphomannosemutase, TB.10.700.370
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 2.0 M (NH4)2SO4, 0.2 M NaCl, 0.1 M NaCacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.927 α = 90 b = 46.994 β = 90 c = 94.494 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5408
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.122 0.115 17.834 6.2 44920 44877 29.343
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 99.3 0.862 0.638 1.4 4.4 4370
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 50 41076 2074 99.89 0.202 0.199 0.2316 0.266 0.2793 RANDOM 31.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 1.03 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.764 r_dihedral_angle_4_deg 17.14 r_dihedral_angle_3_deg 14.517 r_dihedral_angle_1_deg 6.119 r_scangle_it 3.215 r_scbond_it 2.203 r_angle_refined_deg 1.471 r_mcangle_it 1.204 r_mcbond_it 0.802 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.764 r_dihedral_angle_4_deg 17.14 r_dihedral_angle_3_deg 14.517 r_dihedral_angle_1_deg 6.119 r_scangle_it 3.215 r_scbond_it 2.203 r_angle_refined_deg 1.471 r_mcangle_it 1.204 r_mcbond_it 0.802 r_nbtor_refined 0.307 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3931 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction