3F6U | pdb_00003f6u

Crystal structure of human Activated Protein C (APC) complexed with PPACK

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1AUT	PDB entry 1AUT

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
3.43	64.1

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 57.06	α = 90
b = 89.6	β = 90
c = 101.23	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entry 1AUT	2.8	35.25	12292	1236	92.34	0.169	0.161	0.1603	0.236	0.2329	RANDOM	27.307

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.11			-0.21		0.32

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.006
r_dihedral_angle_4_deg	22.48
r_dihedral_angle_3_deg	21.996
r_dihedral_angle_1_deg	7.563
r_scangle_it	5.321
r_scbond_it	3.255
r_angle_refined_deg	2.567
r_mcangle_it	2.258
r_mcbond_it	1.205
r_metal_ion_refined	0.402
r_symmetry_hbond_refined	0.366
r_nbtor_refined	0.333
r_nbd_refined	0.273
r_symmetry_vdw_refined	0.263
r_chiral_restr	0.165
r_xyhbond_nbd_refined	0.155
r_bond_refined_d	0.027
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2639
Nucleic Acid Atoms
Solvent Atoms	147
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
AMoRE	phasing