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C2 Crystal form of mite allergen DER P 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AS8 PDB entry 2AS8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.75 3.5MG/ML DER P1 NON GLYCOSYLATED IN 50MM NA ACETATE, 0.005% AZ, LOW SALT, PH 5.75, SLOW EVAPORATION, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 2.5 50.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.196 α = 90 b = 84.07 β = 123.81 c = 75.437 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2006-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0723 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 50 98.5 0.069 0.069 25.3 3.6 103499 -3 12.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.38 91.5 0.551 0.551 2.1 2.9 4795
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2AS8 1.36 35.81 98812 98812 5200 98.4 0.1589 0.1589 0.15761 0.1719 0.18338 0.1957 RANDOM 8.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.16 -0.06 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 13.145 r_dihedral_angle_1_deg 5.834 r_scangle_it 4.428 r_scbond_it 2.831 r_angle_other_deg 2.332 r_mcangle_it 1.815 r_angle_refined_deg 1.732 r_mcbond_it 1.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 13.145 r_dihedral_angle_1_deg 5.834 r_scangle_it 4.428 r_scbond_it 2.831 r_angle_other_deg 2.332 r_mcangle_it 1.815 r_angle_refined_deg 1.732 r_mcbond_it 1.059 r_chiral_restr 0.311 r_mcbond_other 0.159 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3524 Nucleic Acid Atoms Solvent Atoms 679 Heterogen Atoms 40
Software Software Software Name Purpose MOLREP phasing Coot model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling