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CRYSTAL STRUCTURE OF putative short chain dehydrogenase from Escherichia coli CFT073
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.2M ammonium acetate, 0.1M HEPES, 25% PEG3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.98 37.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.412 α = 100.29 b = 48.011 β = 102.67 c = 65.232 γ = 105.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-10-22 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 94.6 0.087 39.862 3.8 41952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.82 92.1 0.192 3.5 4078
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 20 41194 2085 100 0.173 0.171 0.182 0.215 0.2264 RANDOM 16.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.04 -0.06 -0.07 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.646 r_dihedral_angle_3_deg 16.042 r_dihedral_angle_4_deg 15.358 r_scbond_it 7.58 r_dihedral_angle_1_deg 6.011 r_mcangle_it 3.485 r_angle_refined_deg 1.402 r_scangle_it 1.346 r_mcbond_it 1.069 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.646 r_dihedral_angle_3_deg 16.042 r_dihedral_angle_4_deg 15.358 r_scbond_it 7.58 r_dihedral_angle_1_deg 6.011 r_mcangle_it 3.485 r_angle_refined_deg 1.402 r_scangle_it 1.346 r_mcbond_it 1.069 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3544 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CBASS data collection SHELXD phasing