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Crystal Structure of the clp gene regulator ClgR from Corynebacterium glutamicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.1 M sodium chloride, 23% 2-methyl-2,4-pentanediol, 15% glycerol, 0.085 M sodium acetate , pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K 2 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.0085 M cobalt chloride, 0.85 M 1,6-hexanediol, 15% glycerol, 0.085 M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.44 α = 90 b = 84.82 β = 95.87 c = 71.43 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PHILLIPS 2007-11-09 M SINGLE WAVELENGTH 2 1 x-ray 100 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA 2 SYNCHROTRON SLS BEAMLINE X06SA 0.9790,0.9793,0.9717 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.05 46 99.7 0.052 16 3.7 48793 48625 1.7 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.15 99.8 0.699 2.8 3.7 6411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 45.74 3 1.7 46193 46193 2432 100 0.21359 0.21234 0.2579 0.23801 0.2744 RANDOM 46.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -1.89 -0.44 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.557 r_dihedral_angle_4_deg 21.781 r_dihedral_angle_3_deg 16.856 r_scangle_it 5.028 r_dihedral_angle_1_deg 4.599 r_scbond_it 3.13 r_mcangle_it 1.658 r_angle_refined_deg 1.465 r_mcbond_it 1.044 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.557 r_dihedral_angle_4_deg 21.781 r_dihedral_angle_3_deg 16.856 r_scangle_it 5.028 r_dihedral_angle_1_deg 4.599 r_scbond_it 3.13 r_mcangle_it 1.658 r_angle_refined_deg 1.465 r_mcbond_it 1.044 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4073 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 4
Software Software Software Name Purpose RemDAq data collection SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling