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Crystal structure of NTF2-like protein of unknown function (YP_677363.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.27 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2000M MgCl2, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.05 40.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.72 α = 90 b = 60.28 β = 90 c = 63.33 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-08-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97936,0.91162,0.97925 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 27.217 94.9 0.056 8.27 29394 -3 13.044
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.27 1.32 97.8 0.519 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.27 27.217 29370 1476 97.93 0.183 0.182 0.189 0.199 0.201 RANDOM 16.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.12 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.61 r_dihedral_angle_4_deg 11.038 r_dihedral_angle_3_deg 9.938 r_sphericity_free 7.735 r_dihedral_angle_1_deg 5.184 r_sphericity_bonded 4.828 r_scangle_it 4.763 r_scbond_it 3.531 r_mcangle_it 2.283 r_rigid_bond_restr 1.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.61 r_dihedral_angle_4_deg 11.038 r_dihedral_angle_3_deg 9.938 r_sphericity_free 7.735 r_dihedral_angle_1_deg 5.184 r_sphericity_bonded 4.828 r_scangle_it 4.763 r_scbond_it 3.531 r_mcangle_it 2.283 r_rigid_bond_restr 1.898 r_angle_refined_deg 1.519 r_mcbond_it 1.481 r_angle_other_deg 1.338 r_mcbond_other 0.811 r_chiral_restr 0.072 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1040 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing