☰ Navigation Tabs
Drug resistant cSrc kinase domain in complex with inhibitor RL45 (Type II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OIQ PDB ENTRY 2OIQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 10% PEG 20000, 15% glycerol, 85mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.01 59.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.06 α = 78.7 b = 63.69 β = 87.02 c = 75.12 γ = 89.96
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Dynamically bendable mirror 2008-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.004730 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 98.2 0.066 16.1 23507 23074 -3 39.548
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.7 97.4 0.27 5.7 2506
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2OIQ 2.6 40 23507 23072 923 100 0.223 0.221 0.2322 0.277 0.2833 RANDOM 17.864
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -0.59 0.2 -0.91 0.24 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.853 r_dihedral_angle_3_deg 19.159 r_dihedral_angle_4_deg 19.02 r_dihedral_angle_1_deg 7.202 r_scangle_it 3.31 r_scbond_it 2.135 r_angle_refined_deg 1.865 r_mcangle_it 1.455 r_mcbond_it 0.866 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.853 r_dihedral_angle_3_deg 19.159 r_dihedral_angle_4_deg 19.02 r_dihedral_angle_1_deg 7.202 r_scangle_it 3.31 r_scbond_it 2.135 r_angle_refined_deg 1.865 r_mcangle_it 1.455 r_mcbond_it 0.866 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.289 r_nbd_refined 0.243 r_xyhbond_nbd_refined 0.211 r_symmetry_hbond_refined 0.192 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4159 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 76
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling