☰ Navigation Tabs
Kinase domain of cSrc in complex with inhibitor RL45 (Type II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OIQ PDB ENTRY 2OIQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 10% PEG 20000, 15% glycerol, 85 mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.99 58.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.055 α = 79.06 b = 63.397 β = 87.72 c = 74.955 γ = 90.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Dynamically bendable mirror 2008-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 94 0.077 13.04 23389 21983 -3 38.29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 92.5 0.221 6.2 2324
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2OIQ 2.6 40 23389 21983 880 100 0.213 0.21 0.2105 0.284 0.2787 RANDOM 23.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 -0.34 0.4 -1.09 0.19 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.203 r_dihedral_angle_3_deg 20.607 r_dihedral_angle_4_deg 18.744 r_dihedral_angle_1_deg 7.443 r_scangle_it 3.5 r_scbond_it 2.279 r_angle_refined_deg 1.893 r_mcangle_it 1.573 r_mcbond_it 0.927 r_symmetry_vdw_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.203 r_dihedral_angle_3_deg 20.607 r_dihedral_angle_4_deg 18.744 r_dihedral_angle_1_deg 7.443 r_scangle_it 3.5 r_scbond_it 2.279 r_angle_refined_deg 1.893 r_mcangle_it 1.573 r_mcbond_it 0.927 r_symmetry_vdw_refined 0.33 r_nbtor_refined 0.325 r_nbd_refined 0.245 r_xyhbond_nbd_refined 0.203 r_symmetry_hbond_refined 0.16 r_chiral_restr 0.126 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4143 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 76
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling