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Crystal structure of LeuT bound to 4-Fluoro-L-Phenylalanine and sodium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A65 PDB entry 2A65
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1M HEPES, 0.4M NaCl, 24-26% PEG-MME 550, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.72 54.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.12 α = 90 b = 86.322 β = 95.19 c = 81.579 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 62.3 92.3 0.078 15.9 3.5 33636 40.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 64.3 0.527 1.7 2.6 2311
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2A65 2.1 47.95 31935 1694 92.28 0.19772 0.19564 0.1961 0.23744 0.2318 RANDOM 40.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.23 1.2 -2.04 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.915 r_dihedral_angle_4_deg 17.038 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 3.511 r_mcangle_it 1.951 r_scangle_it 1.693 r_mcbond_it 1.212 r_scbond_it 1.169 r_angle_refined_deg 0.989 r_nbtor_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.915 r_dihedral_angle_4_deg 17.038 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 3.511 r_mcangle_it 1.951 r_scangle_it 1.693 r_mcbond_it 1.212 r_scbond_it 1.169 r_angle_refined_deg 0.989 r_nbtor_refined 0.33 r_symmetry_hbond_refined 0.275 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.193 r_metal_ion_refined 0.182 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4069 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 115
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling