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Crystal structure of Protein Z complexed with protein Z-dependent inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 293 20-30% PEG3000, 0.1M Citrate, pH 7, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.55 51.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.562 α = 90 b = 96.514 β = 90 c = 117.077 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9796 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 44.63 92.6 0.067 15.4 5.3 35186 32582 2 1.5 29.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 69.4 0.561 0.47 1.5 3 3462
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 44.63 30891 1640 92.39 0.22662 0.2243 0.2293 0.27052 0.2759 RANDOM 30.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 0.38 1.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.29 r_dihedral_angle_3_deg 13.394 r_dihedral_angle_4_deg 12.752 r_dihedral_angle_1_deg 5.569 r_scangle_it 1.355 r_angle_refined_deg 0.946 r_scbond_it 0.802 r_angle_other_deg 0.753 r_mcangle_it 0.584 r_mcbond_it 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.29 r_dihedral_angle_3_deg 13.394 r_dihedral_angle_4_deg 12.752 r_dihedral_angle_1_deg 5.569 r_scangle_it 1.355 r_angle_refined_deg 0.946 r_scbond_it 0.802 r_angle_other_deg 0.753 r_mcangle_it 0.584 r_mcbond_it 0.305 r_chiral_restr 0.054 r_mcbond_other 0.038 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5127 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 32
Software Software Software Name Purpose MOSFLM data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction