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Crystal structure of the human Adenovirus type 14 fiber knob
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EXV Human Adenovirus type 11 fiber knob
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293.15 20% (w/v) PEG 8000, 0.1M CHES, 200mM NaCl, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.47 α = 90 b = 106.47 β = 90 c = 311.71 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.15 PIXEL PSI PILATUS 6M 2007-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.4 99.1 0.078 187138 185386 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 94.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Human Adenovirus type 11 fiber knob 1.8 47.4 176156 176156 9272 100 0.18937 0.18803 0.1916 0.21495 0.2168 RANDOM 14.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.416 r_dihedral_angle_4_deg 11.835 r_dihedral_angle_3_deg 9.937 r_dihedral_angle_1_deg 5.929 r_angle_refined_deg 0.926 r_scangle_it 0.86 r_angle_other_deg 0.748 r_scbond_it 0.584 r_mcangle_it 0.485 r_mcbond_it 0.439
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.416 r_dihedral_angle_4_deg 11.835 r_dihedral_angle_3_deg 9.937 r_dihedral_angle_1_deg 5.929 r_angle_refined_deg 0.926 r_scangle_it 0.86 r_angle_other_deg 0.748 r_scbond_it 0.584 r_mcangle_it 0.485 r_mcbond_it 0.439 r_nbd_other 0.178 r_nbtor_refined 0.17 r_nbd_refined 0.167 r_symmetry_vdw_other 0.163 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.08 r_nbtor_other 0.079 r_chiral_restr 0.057 r_mcbond_other 0.039 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13904 Nucleic Acid Atoms Solvent Atoms 1803 Heterogen Atoms 39
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling