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Arsenate reductase from Vibrio cholerae.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 2.4 M sodium malonate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4.1 69.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.704 α = 90 b = 118.704 β = 90 c = 110.013 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2008-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 31.7 99.9 0.09 39.832 13.7 37716 37716 37
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.91 99.8 0.764 2.04 8.2 1841
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.88 31.7 37124 37124 1863 98.5 0.167 0.167 0.166 0.1774 0.189 0.1954 RANDOM 23.387
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.3 0.61 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.316 r_dihedral_angle_4_deg 20.943 r_dihedral_angle_3_deg 12.993 r_dihedral_angle_1_deg 5.347 r_scangle_it 4.513 r_scbond_it 2.711 r_mcangle_it 1.648 r_angle_refined_deg 1.534 r_angle_other_deg 0.916 r_mcbond_it 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.316 r_dihedral_angle_4_deg 20.943 r_dihedral_angle_3_deg 12.993 r_dihedral_angle_1_deg 5.347 r_scangle_it 4.513 r_scbond_it 2.711 r_mcangle_it 1.648 r_angle_refined_deg 1.534 r_angle_other_deg 0.916 r_mcbond_it 0.91 r_mcbond_other 0.254 r_chiral_restr 0.095 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1874 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing