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Crystal structure of transcriptional regulator from Cytophaga hutchinsonii ATCC 33406
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 292 1.0 Ammonium sulfate, 0.1M Hepes, 0.5% Pag 8000, pH 7.0 , VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.54 65.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.099 α = 90 b = 116.099 β = 90 c = 46.367 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 40 99.5 0.1 25 8.4 7735 7695 2 2 86.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3 100 0.591 3.8 8.6 362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.96 40 2 2 7685 7335 350 99.42 0.22 0.21046 0.20883 0.2342 0.27083 0.2943 RANDOM 32.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.4 -0.7 -1.4 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.697 r_dihedral_angle_4_deg 23.979 r_dihedral_angle_3_deg 21.617 r_dihedral_angle_1_deg 7.146 r_scangle_it 3.402 r_scbond_it 2.051 r_angle_refined_deg 1.844 r_mcangle_it 1.415 r_angle_other_deg 1.002 r_mcbond_it 0.698
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.697 r_dihedral_angle_4_deg 23.979 r_dihedral_angle_3_deg 21.617 r_dihedral_angle_1_deg 7.146 r_scangle_it 3.402 r_scbond_it 2.051 r_angle_refined_deg 1.844 r_mcangle_it 1.415 r_angle_other_deg 1.002 r_mcbond_it 0.698 r_mcbond_other 0.102 r_chiral_restr 0.088 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1536 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 10
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELX model building Coot model building MLPHARE phasing DM model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing DM phasing