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PFA1 Fab fragment complexed with pyro-Glu3-A-Beta (3-8)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 25% w/v PEG2000-MME, pH 8.5, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 41.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.656 α = 96.14 b = 42.677 β = 93.83 c = 58.63 γ = 91.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 25.3 86.38 23906
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.001 49.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.95 25.3 23906 1293 86.38 0.207 0.204 0.205 0.256 0.2548 RANDOM 35.068
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.58 -0.57 0.59 -1.14 -0.89 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.425 r_dihedral_angle_4_deg 19.791 r_dihedral_angle_3_deg 13.874 r_dihedral_angle_1_deg 6.274 r_scangle_it 2.603 r_scbond_it 1.699 r_angle_refined_deg 1.343 r_mcangle_it 1.302 r_mcbond_it 0.776 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.425 r_dihedral_angle_4_deg 19.791 r_dihedral_angle_3_deg 13.874 r_dihedral_angle_1_deg 6.274 r_scangle_it 2.603 r_scbond_it 1.699 r_angle_refined_deg 1.343 r_mcangle_it 1.302 r_mcbond_it 0.776 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3376 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction