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Crystal structure of putative alpha-L-fucosidase from Bacteroides thetaiotaomicron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 1.8M ammonium tri-citrate pH 7.0, Vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.8 56.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.709 α = 90 b = 125.193 β = 90 c = 158.207 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 98.173 100 0.11 0.11 10 10.2 94178 94178 32.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.639 0.639 2.1 10.1 13620
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 20 94100 94091 4717 99.99 0.211 0.208 0.2196 0.252 0.2602 RANDOM 46.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.83 -0.6 2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.594 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 15.212 r_dihedral_angle_1_deg 6.222 r_scangle_it 3.878 r_scbond_it 2.579 r_angle_other_deg 1.826 r_angle_refined_deg 1.613 r_mcangle_it 1.491 r_mcbond_it 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.594 r_dihedral_angle_4_deg 18.982 r_dihedral_angle_3_deg 15.212 r_dihedral_angle_1_deg 6.222 r_scangle_it 3.878 r_scbond_it 2.579 r_angle_other_deg 1.826 r_angle_refined_deg 1.613 r_mcangle_it 1.491 r_mcbond_it 0.901 r_mcbond_other 0.279 r_chiral_restr 0.105 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7302 Nucleic Acid Atoms Solvent Atoms 638 Heterogen Atoms 48
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXCD phasing SHELXE model building