☰ Navigation Tabs
The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.1M Tris-HCl pH 8.5, 31-33% PEG 4000, 200-260 mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.76 30.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.53 α = 90 b = 58.249 β = 90 c = 88.609 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-01-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9795, 0.9798, 0.9721 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 95.8 0.075 27940 26766 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 84.3 0.156 8.9 2301
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 20 26420 23803 2617 94.7 0.15719 0.15719 0.15322 0.1577 0.1935 0.1968 RANDOM 15.757
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.23 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.457 r_scangle_it 3.44 r_scbond_it 2.413 r_mcangle_it 1.755 r_angle_refined_deg 1.649 r_mcbond_it 0.97 r_nbd_refined 0.275 r_symmetry_hbond_refined 0.226 r_xyhbond_nbd_refined 0.224 r_symmetry_vdw_refined 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.457 r_scangle_it 3.44 r_scbond_it 2.413 r_mcangle_it 1.755 r_angle_refined_deg 1.649 r_mcbond_it 0.97 r_nbd_refined 0.275 r_symmetry_hbond_refined 0.226 r_xyhbond_nbd_refined 0.224 r_symmetry_vdw_refined 0.213 r_chiral_restr 0.091 r_bond_refined_d 0.018 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1095 Nucleic Acid Atoms 263 Solvent Atoms 351 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection autoSHARP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling