☰ Navigation Tabs
Structure of the RNA'se SSO8090 from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 295 2 M ammonium sulfate, 0.1 M Hepes 7.5, 1% PEG550 MME plus 0.015 mg/ml chymotrypsin. Cryoprotected in 20% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.85 56.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.479 α = 90 b = 93.479 β = 90 c = 48.596 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 99.2 0.08 50 15.8 8834 33.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 88.7 0.757 2.33 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 41.67 6296 291 99.8 0.193 0.191 0.2314 0.221 0.2745 RANDOM 41.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.177 r_dihedral_angle_4_deg 23.679 r_dihedral_angle_3_deg 21.018 r_dihedral_angle_1_deg 7.503 r_scangle_it 7.34 r_scbond_it 4.561 r_mcangle_it 2.924 r_angle_refined_deg 2.299 r_mcbond_it 1.514 r_nbtor_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.177 r_dihedral_angle_4_deg 23.679 r_dihedral_angle_3_deg 21.018 r_dihedral_angle_1_deg 7.503 r_scangle_it 7.34 r_scbond_it 4.561 r_mcangle_it 2.924 r_angle_refined_deg 2.299 r_mcbond_it 1.514 r_nbtor_refined 0.331 r_nbd_refined 0.273 r_symmetry_hbond_refined 0.231 r_symmetry_vdw_refined 0.2 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.143 r_bond_refined_d 0.027 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 637 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 2
Software Software Software Name Purpose HKL-3000 data collection SHELXCD phasing SHELXE model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling