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Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B4O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 284 0.1M Bis-TRIS, 0.2M NH4OAc, 20% (w/v) PEG 3350, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.35 47.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.94 α = 90 b = 79.68 β = 90 c = 64.24 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 42.26 97.4 0.064 20.1 9.2 10609 10338 5.5 48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.3 95.7 0.429 5.5 8.6 1305
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3B4O 2.2 20 9803 535 97.45 0.19476 0.19218 0.204 0.23968 0.2431 RANDOM 54.538
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.84 3.08 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.708 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 18.399 r_dihedral_angle_1_deg 7.534 r_scangle_it 3.958 r_scbond_it 2.563 r_angle_refined_deg 1.831 r_mcangle_it 1.632 r_mcbond_it 1.097 r_angle_other_deg 0.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.708 r_dihedral_angle_4_deg 20.307 r_dihedral_angle_3_deg 18.399 r_dihedral_angle_1_deg 7.534 r_scangle_it 3.958 r_scbond_it 2.563 r_angle_refined_deg 1.831 r_mcangle_it 1.632 r_mcbond_it 1.097 r_angle_other_deg 0.966 r_symmetry_vdw_other 0.314 r_mcbond_other 0.265 r_nbd_other 0.216 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_refined 0.193 r_nbtor_refined 0.191 r_symmetry_hbond_refined 0.182 r_chiral_restr 0.116 r_nbtor_other 0.095 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1253 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling