☰ Navigation Tabs
human orotidyl-5'-monophosphate decarboxylase in complex with BMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 300 0.1 M Tris-HCl pH 8.0, 1.8 M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 300.0K
Crystal Properties Matthews coefficient Solvent content 2.48 50.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.32 α = 90 b = 116.9 β = 90 c = 62.06 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 44.7 98.9 0.075 11.8 6.1 78072
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.24 1.26 47.1 0.359 1.6 4.8 517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.24 38.66 73733 3928 98.49 0.11937 0.11854 0.1158 0.13507 0.136 RANDOM 9.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.16 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.723 r_dihedral_angle_4_deg 14.111 r_dihedral_angle_3_deg 12.932 r_sphericity_free 7.292 r_dihedral_angle_1_deg 5.947 r_scangle_it 4.939 r_scbond_it 3.23 r_angle_other_deg 3.184 r_sphericity_bonded 3.017 r_mcangle_it 2.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.723 r_dihedral_angle_4_deg 14.111 r_dihedral_angle_3_deg 12.932 r_sphericity_free 7.292 r_dihedral_angle_1_deg 5.947 r_scangle_it 4.939 r_scbond_it 3.23 r_angle_other_deg 3.184 r_sphericity_bonded 3.017 r_mcangle_it 2.187 r_angle_refined_deg 1.607 r_rigid_bond_restr 1.523 r_mcbond_it 1.438 r_mcbond_other 0.714 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2096 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 22
Software Software Software Name Purpose COMO phasing REFMAC refinement XDS data reduction SADABS data scaling