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human orotidyl-5'-monophosphate decarboxylase in complex with 5-cyano-UMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 300 0.1 M Tris-HCl pH 8.0, 1.8 M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 300.0K
Crystal Properties Matthews coefficient Solvent content 2.58 52.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.557 α = 90 b = 60.793 β = 99.29 c = 136.087 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 46.08 85.3 0.069 9.6 2.6 193472
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.46 35.6 0.378 1.5 0.7 8026
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 46.08 177695 9355 82.48 0.15593 0.1543 0.153 0.18701 0.1844 RANDOM 10.678
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.76 -0.38 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.327 r_dihedral_angle_4_deg 15.341 r_dihedral_angle_3_deg 12.988 r_dihedral_angle_1_deg 5.992 r_sphericity_free 4.384 r_scangle_it 3.753 r_angle_other_deg 2.721 r_scbond_it 2.42 r_sphericity_bonded 1.851 r_mcangle_it 1.589
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.327 r_dihedral_angle_4_deg 15.341 r_dihedral_angle_3_deg 12.988 r_dihedral_angle_1_deg 5.992 r_sphericity_free 4.384 r_scangle_it 3.753 r_angle_other_deg 2.721 r_scbond_it 2.42 r_sphericity_bonded 1.851 r_mcangle_it 1.589 r_angle_refined_deg 1.487 r_rigid_bond_restr 1.136 r_mcbond_it 0.974 r_mcbond_other 0.382 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8275 Nucleic Acid Atoms Solvent Atoms 1248 Heterogen Atoms 102
Software Software Software Name Purpose COMO phasing REFMAC refinement XDS data reduction SADABS data scaling