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K314A mutant of human orotidyl-5'-monophosphate decarboxylase soaked with OMP, decarboxylated to UMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 300 0.1 M Tris-HCl pH 8.0, 1.8 M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 300.0K
Crystal Properties Matthews coefficient Solvent content 2.49 50.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.12 α = 90 b = 116.7 β = 90 c = 61.82 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 44.8 95.1 0.048 10.8 5.1 108733
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 51.6 0.469 1.1 0.9 1550
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 42.45 99960 5326 92.14 0.13382 0.13287 0.1427 0.15184 0.1643 RANDOM 14.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 -1.15 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.162 r_dihedral_angle_4_deg 15.889 r_dihedral_angle_3_deg 13.075 r_sphericity_free 8.201 r_dihedral_angle_1_deg 6.062 r_scangle_it 5.371 r_sphericity_bonded 4.205 r_scbond_it 3.59 r_mcangle_it 2.405 r_rigid_bond_restr 1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.162 r_dihedral_angle_4_deg 15.889 r_dihedral_angle_3_deg 13.075 r_sphericity_free 8.201 r_dihedral_angle_1_deg 6.062 r_scangle_it 5.371 r_sphericity_bonded 4.205 r_scbond_it 3.59 r_mcangle_it 2.405 r_rigid_bond_restr 1.87 r_angle_refined_deg 1.79 r_mcbond_it 1.686 r_angle_other_deg 1.42 r_mcbond_other 1.19 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1963 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 33
Software Software Software Name Purpose COMO phasing REFMAC refinement XDS data reduction SADABS data scaling