☰ Navigation Tabs
K314A mutant of human orotidyl-5'-monophosphate decarboxylase in complex with 6-azido-UMP, degraded to BMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 300 0.1 M Tris-HCl pH 8.0, 1.8 M (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 300.0K
Crystal Properties Matthews coefficient Solvent content 2.48 50.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.75 α = 90 b = 116.72 β = 90 c = 61.8 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 34.79 99.7 0.097 11 6.6 55483
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 94.6 0.656 1.3 3.1 1083
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 34.79 52007 2778 98.48 0.15167 0.15029 0.1558 0.17789 0.1881 RANDOM 11.235
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 -1.01 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.819 r_dihedral_angle_4_deg 15.134 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 5.893 r_sphericity_free 4.957 r_scangle_it 4.177 r_scbond_it 2.643 r_sphericity_bonded 1.951 r_mcangle_it 1.607 r_angle_refined_deg 1.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.819 r_dihedral_angle_4_deg 15.134 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 5.893 r_sphericity_free 4.957 r_scangle_it 4.177 r_scbond_it 2.643 r_sphericity_bonded 1.951 r_mcangle_it 1.607 r_angle_refined_deg 1.368 r_rigid_bond_restr 1.269 r_mcbond_it 0.996 r_angle_other_deg 0.913 r_mcbond_other 0.386 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1966 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 28
Software Software Software Name Purpose COMO phasing REFMAC refinement XDS data reduction SADABS data scaling