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Crystal structure of FTase(ALPHA-subunit; BETA-subunit DELTA C10, W102T, Y154T) in complex with BiotinGPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FT1 PDB ENTRY 1FT1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.38 63.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.783 α = 90 b = 174.783 β = 90 c = 70.377 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9791 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 30 99.8 0.07 17.9 6.2 32179 32121 5 57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.75 2.85 99.7 0.353 6.8 6.3 3247
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FT1 2.75 29.97 30489 1613 99.85 0.17252 0.16939 0.1785 0.23149 0.2321 RANDOM 53.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.43 0.86 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.648 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 18.498 r_dihedral_angle_1_deg 7.409 r_scangle_it 4.818 r_angle_other_deg 3.655 r_scbond_it 3.098 r_mcangle_it 2.659 r_mcbond_other 2.554 r_angle_refined_deg 1.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.648 r_dihedral_angle_4_deg 18.897 r_dihedral_angle_3_deg 18.498 r_dihedral_angle_1_deg 7.409 r_scangle_it 4.818 r_angle_other_deg 3.655 r_scbond_it 3.098 r_mcangle_it 2.659 r_mcbond_other 2.554 r_angle_refined_deg 1.744 r_mcbond_it 1.619 r_symmetry_vdw_other 0.299 r_nbd_refined 0.237 r_nbd_other 0.235 r_symmetry_hbond_refined 0.23 r_nbtor_refined 0.198 r_chiral_restr 0.182 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.15 r_nbtor_other 0.11 r_bond_refined_d 0.019 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5847 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 36
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling