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The crystal structure of the DNA binding protein from Silicibacter pomeroyi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 289 20% W/V PEG1000, 0.1M phosphate-citrate, 0.2M Li2SO4, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.15 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.164 α = 90 b = 60.641 β = 90 c = 68.506 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.41 99.32 0.06 34.9 8.4 15276 15172 2 2 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.847 95.29 0.734 1.36 6.8 1168
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 45.41 15276 15172 800 99.32 0.20351 0.20099 0.2173 0.25375 0.2637 RANDOM 17.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.44 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.521 r_dihedral_angle_4_deg 20.041 r_dihedral_angle_3_deg 15.297 r_dihedral_angle_1_deg 5.913 r_scangle_it 4.904 r_scbond_it 3.006 r_mcangle_it 1.765 r_angle_refined_deg 1.581 r_angle_other_deg 1.017 r_mcbond_it 0.988
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.521 r_dihedral_angle_4_deg 20.041 r_dihedral_angle_3_deg 15.297 r_dihedral_angle_1_deg 5.913 r_scangle_it 4.904 r_scbond_it 3.006 r_mcangle_it 1.765 r_angle_refined_deg 1.581 r_angle_other_deg 1.017 r_mcbond_it 0.988 r_mcbond_other 0.283 r_chiral_restr 0.104 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1282 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling