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Crystal Structure of E. coli Trbp111
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 PEG1000, ammonium sulfate, imidazole, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.86 34.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.234 α = 90 b = 41.234 β = 90 c = 95.377 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 1999-10-26 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.54 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 19.83 97.6 0.031 8245 8064
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.94 96.1 0.116 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.87 19.83 8050 374 97.49 0.22 0.216 0.2142 0.282 0.2812 RANDOM 27.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.21 0.42 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.02 r_dihedral_angle_3_deg 18.621 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_1_deg 9.142 r_scangle_it 4.672 r_scbond_it 3.128 r_angle_refined_deg 2.142 r_mcangle_it 2.003 r_mcbond_it 1.377 r_symmetry_hbond_refined 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.02 r_dihedral_angle_3_deg 18.621 r_dihedral_angle_4_deg 15.563 r_dihedral_angle_1_deg 9.142 r_scangle_it 4.672 r_scbond_it 3.128 r_angle_refined_deg 2.142 r_mcangle_it 2.003 r_mcbond_it 1.377 r_symmetry_hbond_refined 0.332 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.287 r_chiral_restr 0.282 r_nbd_refined 0.28 r_xyhbond_nbd_refined 0.214 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 870 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction