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The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 289 0.1M Bicine, 2.4M Ammonium Sulfate, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.971 α = 90 b = 74.971 β = 90 c = 213.784 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirror 2007-11-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937, 0.97948 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 42 99.7 0.103 43.6 10.4 13874 13874
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 98.2 0.807 1.96 6.4 666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.45 41.27 13080 13080 690 99.41 0.2168 0.2168 0.2141 0.2153 0.26892 0.2698 RANDOM 45.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.35 0.69 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.18 r_dihedral_angle_4_deg 21.135 r_dihedral_angle_3_deg 20.424 r_dihedral_angle_1_deg 5.981 r_scangle_it 2.271 r_mcangle_it 2.083 r_angle_refined_deg 1.61 r_scbond_it 1.413 r_mcbond_it 1.198 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.18 r_dihedral_angle_4_deg 21.135 r_dihedral_angle_3_deg 20.424 r_dihedral_angle_1_deg 5.981 r_scangle_it 2.271 r_mcangle_it 2.083 r_angle_refined_deg 1.61 r_scbond_it 1.413 r_mcbond_it 1.198 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2426 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 5
Software Software Software Name Purpose SBC-Collect data collection SHELXD phasing MLPHARE phasing DM model building RESOLVE model building HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing