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Crystal structure of beta-1,3-glucanase from Phanerochaete chrysosporium (Lam55A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 298 15% PEG 3350, 0.1M zinc acetate, 0.05M MES-NaOH, 10% glycerol, 2% ethanol, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.281 α = 81.04 b = 67.148 β = 76.34 c = 105.183 γ = 61.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-08 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2006-05-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.97898, 0.97917, 0.96395 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 50 88.8 0.065 19.1 3.4 168824 149947 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.76 64.5 0.246 3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 27.21 149947 142399 7544 88.63 0.15082 0.14904 0.1485 0.18412 0.1838 RANDOM 16.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.904 r_dihedral_angle_4_deg 15.538 r_dihedral_angle_3_deg 11.346 r_dihedral_angle_1_deg 6.838 r_scangle_it 2.601 r_scbond_it 1.666 r_angle_refined_deg 1.313 r_mcangle_it 1.041 r_mcbond_it 0.585 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.904 r_dihedral_angle_4_deg 15.538 r_dihedral_angle_3_deg 11.346 r_dihedral_angle_1_deg 6.838 r_scangle_it 2.601 r_scbond_it 1.666 r_angle_refined_deg 1.313 r_mcangle_it 1.041 r_mcbond_it 0.585 r_nbtor_refined 0.311 r_metal_ion_refined 0.205 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.175 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11222 Nucleic Acid Atoms Solvent Atoms 1628 Heterogen Atoms 166
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling