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Crystal Structure of Phosphoglycerate Mutase from Plasmodium Falciparum, PFD0660w
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.75 55.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.244 α = 90 b = 116.244 β = 90 c = 81.986 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 98.4 0.095 0.064 23.633 7.5 42163 41489 53.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 87.5 0.802 0.633 1.83 6.5 1843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 47.4 22596 22328 1144 98.81 0.237 0.237 0.234 0.2376 0.28 0.281 RANDOM 51.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.79 -0.79 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.024 r_dihedral_angle_4_deg 20.115 r_dihedral_angle_3_deg 16.518 r_dihedral_angle_1_deg 6.069 r_scangle_it 2.621 r_scbond_it 1.607 r_mcangle_it 1.398 r_angle_refined_deg 1.273 r_angle_other_deg 0.851 r_mcbond_it 0.739
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.024 r_dihedral_angle_4_deg 20.115 r_dihedral_angle_3_deg 16.518 r_dihedral_angle_1_deg 6.069 r_scangle_it 2.621 r_scbond_it 1.607 r_mcangle_it 1.398 r_angle_refined_deg 1.273 r_angle_other_deg 0.851 r_mcbond_it 0.739 r_mcbond_other 0.092 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2643 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction