3EOJ

Fmo protein from Prosthecochloris Aestuarii 2K AT 1.3A Resolution


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BCLPDB entry 1BCL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.8298Well Solution: 10mM Tris/HCL pH 8.0, 1.0M NaCl, 10% w/v (NH4)2SO4. Protein Solution: 10mM Tris/HCL pH 7.8 1.0M NaCl at 14mg/ml of complex. Drop composed of 5ul of protein solution and 3ul of well solution., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.3571.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.242α = 90
b = 111.242β = 90
c = 98.198γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRRORS2007-01-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.000ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.35099.90.07426.57.816829216829215.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.351000.5962.776.216812

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE RPDB entry 1BCL1.350168283168283843894.90.13650.13650.13530.1613RANDOM16.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
1253115.13629.76
RMS Deviations
KeyRefinement Restraint Deviation
s_approx_iso_adps0.093
s_non_zero_chiral_vol0.078
s_zero_chiral_vol0.07
s_similar_adp_cmpnt0.032
s_from_restr_planes0.0311
s_angle_d0.03
s_anti_bump_dis_restr0.03
s_bond_d0.013
s_rigid_bond_adp_cmpnt0.004
s_similar_dist
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2745
Nucleic Acid Atoms
Solvent Atoms406
Heterogen Atoms571

Software

Software
Software NamePurpose
ARP/wARPmodel building
SHELXL-97refinement
HKL-2000data reduction
SCALEPACKdata scaling