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Crystal structure of protein of unknown function (DUF1255) (AFE_2634) from ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 at 0.97 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2000M MgCl2, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.08 40.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.785 α = 90 b = 82.028 β = 109.95 c = 40.847 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-08-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.97 28.194 99.4 0.064 0.064 5.911 4.1 111566 7.317
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.97 1 98 0.703 0.703 1.1 3.5 8165
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 0.97 28.194 111533 5605 99.36 0.124 0.123 0.1311 0.143 0.1472 RANDOM 11.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.2 -0.26 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.194 r_dihedral_angle_3_deg 13.226 r_dihedral_angle_4_deg 12.682 r_sphericity_free 10.276 r_dihedral_angle_1_deg 7.325 r_scangle_it 5.464 r_scbond_it 4.327 r_sphericity_bonded 4.001 r_mcangle_it 3.182 r_mcbond_it 2.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.194 r_dihedral_angle_3_deg 13.226 r_dihedral_angle_4_deg 12.682 r_sphericity_free 10.276 r_dihedral_angle_1_deg 7.325 r_scangle_it 5.464 r_scbond_it 4.327 r_sphericity_bonded 4.001 r_mcangle_it 3.182 r_mcbond_it 2.255 r_angle_refined_deg 1.92 r_rigid_bond_restr 1.902 r_mcbond_other 1.467 r_angle_other_deg 0.973 r_chiral_restr 0.105 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2227 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHARP phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction