☰ Navigation Tabs
Crystal Structure of the GluR4 Ligand-Binding domain in complex with kainate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 25.5% PEG 1500, 0.05M Na-Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.41 48.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.906 α = 90 b = 48.749 β = 109.06 c = 47.766 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2006-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 11.95 95.3 10516 10025 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.49 94.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.43 11.95 10516 10025 502 0.159 0.159 0.156 0.1583 0.219 0.2134 RANDOM 43.628
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.08 -0.21 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.023 r_dihedral_angle_4_deg 17.547 r_dihedral_angle_3_deg 16.088 r_dihedral_angle_1_deg 5.149 r_scangle_it 1.796 r_angle_refined_deg 1.173 r_scbond_it 1.054 r_mcangle_it 0.697 r_mcbond_it 0.396 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.023 r_dihedral_angle_4_deg 17.547 r_dihedral_angle_3_deg 16.088 r_dihedral_angle_1_deg 5.149 r_scangle_it 1.796 r_angle_refined_deg 1.173 r_scbond_it 1.054 r_mcangle_it 0.697 r_mcbond_it 0.396 r_nbtor_refined 0.296 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.148 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.077 r_symmetry_hbond_refined 0.044 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2014 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction XDS data scaling CNS phasing