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Wesselsbron virus Methyltransferase in complex with Sinefungin and 7MeGpppA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ELU pdb entry 3ELU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293 1mM Sinefungin, 1mM 7MeGpppA, 10% PEG 4000, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.13 42.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.057 α = 90 b = 61.157 β = 90 c = 128.831 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2007-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 44.37 99.6 0.094 11.5 3.5 21485 20462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.9 0.293 4.6 3.5 3093
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3ELU 2 32.21 20333 19365 1045 99.31 0.16457 0.16457 0.16189 0.1659 0.21466 RANDOM 13.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.96 r_dihedral_angle_4_deg 15.055 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_1_deg 12.157 r_scangle_it 5.133 r_scbond_it 3.48 r_mcangle_it 2.213 r_mcbond_it 1.315 r_angle_refined_deg 1.224 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.96 r_dihedral_angle_4_deg 15.055 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_1_deg 12.157 r_scangle_it 5.133 r_scbond_it 3.48 r_mcangle_it 2.213 r_mcbond_it 1.315 r_angle_refined_deg 1.224 r_nbtor_refined 0.296 r_nbd_refined 0.182 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.132 r_symmetry_vdw_refined 0.122 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2082 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 71
Software Software Software Name Purpose MOSFLM data reduction MOLREP phasing REFMAC refinement SCALA data scaling