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Wesselsbron virus Methyltransferase in complex with AdoMet and 7MeGpppG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ELU PDB ENTRY 3ELU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 10mM AdoMet, 1mM 7MeGpppG, 18% PEG 4000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.236 α = 90 b = 61.297 β = 90 c = 128.012 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2007-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 64.02 100 0.137 11.4 5.8 14380 13695
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 100 0.539 3 5.1 2035
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ELU 2.3 35.03 13614 12966 677 99.98 0.16921 0.16921 0.16616 0.1804 0.22884 RANDOM 19.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.05 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.139 r_dihedral_angle_4_deg 16.691 r_dihedral_angle_3_deg 16.037 r_scangle_it 7.774 r_dihedral_angle_1_deg 5.762 r_scbond_it 4.942 r_mcangle_it 3.029 r_mcbond_it 1.781 r_angle_refined_deg 1.549 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.139 r_dihedral_angle_4_deg 16.691 r_dihedral_angle_3_deg 16.037 r_scangle_it 7.774 r_dihedral_angle_1_deg 5.762 r_scbond_it 4.942 r_mcangle_it 3.029 r_mcbond_it 1.781 r_angle_refined_deg 1.549 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.203 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.144 r_chiral_restr 0.124 r_xyhbond_nbd_refined 0.12 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2088 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 89
Software Software Software Name Purpose MOSFLM data reduction MOLREP phasing REFMAC refinement SCALA data scaling