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Wesselsbron virus Methyltransferase in complex with AdoMet and GpppG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ELU PDB ENTRY 3ELU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 293 10mM AdoMet, 1mM GpppG, 20% PEG 4000, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.885 α = 90 b = 70.066 β = 90 c = 91.396 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2007-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 55.6 100 0.113 13 6.3 26743 25470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 100 0.421 4.5 6.4 3820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ELU 1.9 19.58 25291 24087 1293 100 0.16498 0.16498 0.16252 0.1694 0.21025 0.2128 RANDOM 16.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.777 r_dihedral_angle_4_deg 12.972 r_dihedral_angle_3_deg 12.792 r_dihedral_angle_1_deg 4.941 r_scangle_it 4.654 r_scbond_it 3.154 r_mcangle_it 1.983 r_angle_refined_deg 1.259 r_mcbond_it 1.225 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.777 r_dihedral_angle_4_deg 12.972 r_dihedral_angle_3_deg 12.792 r_dihedral_angle_1_deg 4.941 r_scangle_it 4.654 r_scbond_it 3.154 r_mcangle_it 1.983 r_angle_refined_deg 1.259 r_mcbond_it 1.225 r_nbtor_refined 0.294 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.121 r_xyhbond_nbd_refined 0.118 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2095 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 103
Software Software Software Name Purpose MOSFLM data reduction MOLREP phasing REFMAC refinement SCALA data scaling