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Wesselsbron virus Methyltransferase in complex with AdoMet
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R6A PDB ENTRY 1r6a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 293 10mM AdoMet, 18% PEG 4000, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.749 α = 90 b = 65.968 β = 90 c = 88.677 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2007-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53 99.9 0.113 10.8 3.4 20518 19541
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 100 0.516 2.2 3.5 2927
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1r6a 2 44.34 19427 18502 997 99.79 0.18056 0.18056 0.17837 0.1802 0.2227 0.2228 RANDOM 19.294
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.29 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.607 r_dihedral_angle_4_deg 15.539 r_dihedral_angle_3_deg 12.626 r_scangle_it 5.534 r_dihedral_angle_1_deg 5.462 r_scbond_it 3.809 r_mcangle_it 2.398 r_mcbond_it 1.68 r_angle_refined_deg 1.119 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.607 r_dihedral_angle_4_deg 15.539 r_dihedral_angle_3_deg 12.626 r_scangle_it 5.534 r_dihedral_angle_1_deg 5.462 r_scbond_it 3.809 r_mcangle_it 2.398 r_mcbond_it 1.68 r_angle_refined_deg 1.119 r_nbtor_refined 0.298 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2203 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 47
Software Software Software Name Purpose MOSFLM data reduction MOLREP phasing REFMAC refinement SCALA data scaling