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Crystal structure of a bacterial arylsulfate sulfotransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.8M LITHIUM SULFATE, 0.1M SODIUM CACODYLATE, pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.75 67.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.727 α = 90 b = 181.727 β = 90 c = 100.428 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-08-29 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 60 99 0.085 0.085 20.3 12.1 124546 2.994 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.06 94.9 0.44 0.4 3.5 6 7897
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 33.9 2 180194 122878 2013 100 0.208 0.207 0.248 RANDOM 33.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.94 -1.97 -3.94 5.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.31 r_dihedral_angle_4_deg 13.148 r_dihedral_angle_3_deg 12.366 r_dihedral_angle_1_deg 6.739 r_scangle_it 1.991 r_scbond_it 1.453 r_angle_refined_deg 1.188 r_mcangle_it 0.967 r_mcbond_other 0.942 r_angle_other_deg 0.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.31 r_dihedral_angle_4_deg 13.148 r_dihedral_angle_3_deg 12.366 r_dihedral_angle_1_deg 6.739 r_scangle_it 1.991 r_scbond_it 1.453 r_angle_refined_deg 1.188 r_mcangle_it 0.967 r_mcbond_other 0.942 r_angle_other_deg 0.941 r_mcbond_it 0.797 r_nbd_other 0.195 r_symmetry_vdw_other 0.194 r_nbd_refined 0.189 r_nbtor_refined 0.173 r_symmetry_hbond_refined 0.144 r_xyhbond_nbd_refined 0.143 r_symmetry_vdw_refined 0.12 r_nbtor_other 0.082 r_chiral_restr 0.074 r_bond_other_d 0.015 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8924 Nucleic Acid Atoms Solvent Atoms 1010 Heterogen Atoms 63
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling