X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherA model generated by PHENIX from the anomalous bromine dataset

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.42952.15 M ammonium sulfate, 100 mM sodium cacodylate pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
3.1961.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.997α = 90
b = 66.997β = 90
c = 186.238γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2008-04-12MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.1159, 0.9200ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85501000.0760.07642.514370893708931
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.921000.6590.6592.514.23513

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTA model generated by PHENIX from the anomalous bromine dataset1.8545.553708933313368799.860.20030.197220.22692RANDOM32.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.350.35-0.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.7
r_dihedral_angle_4_deg20.371
r_dihedral_angle_3_deg15.839
r_dihedral_angle_1_deg6.012
r_scangle_it5.635
r_scbond_it3.397
r_mcangle_it2.549
r_angle_refined_deg1.794
r_mcbond_it1.409
r_chiral_restr0.148
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.7
r_dihedral_angle_4_deg20.371
r_dihedral_angle_3_deg15.839
r_dihedral_angle_1_deg6.012
r_scangle_it5.635
r_scbond_it3.397
r_mcangle_it2.549
r_angle_refined_deg1.794
r_mcbond_it1.409
r_chiral_restr0.148
r_bond_refined_d0.019
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1989
Nucleic Acid Atoms
Solvent Atoms247
Heterogen Atoms6

Software

Software
Software NamePurpose
ADSCdata collection
PHENIXmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing